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The Slow Queries. Chances are the query is on that component somewhere. A good script i found a while ago on SQL server performance will help get you started.
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The advantage of the slow query log is that you can instantly inspect a slow query. To analyze the slow query log file you can parse it directly to review its contents. However it may also be a good idea to check the queries that are being run against that database.
Mysqldumpslow -a varlogmysql-slowlog.
Once the slow query log is enabled you will need to periodically follow-up with it to review unruly queries that need to be adjusted for better performance. Chances are the query is on that component somewhere. Mysqldumpslow -a varlogmysql-slowlog. In SQL 2005 you can use management views to find slow running queries.
